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Mastering Ontology Engineering with Protégé and Pizza.owl

From Semantic Foundations to Executable Knowledge Architecture (EKA)

This book is 44% completeLast updated on 2026-07-16
Transform the classic pizza.owl tutorial into a launchpad for cutting-edge semantic engineering! This hands-on guide bridges the gap between theory and practice, showing you exactly how to build ontology-based meta-models and deploy executable knowledge graphs. Master the "Diagramming as Code" methodologies of the Executable Knowledge Architecture (EKA) framework through a continuous,…

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About

About

About the Book

This is not a static textbook. It is a living, evolving guide — written in the open and updated continuously alongside a complete video tutorial series.

Protégé Pizza transforms the legendary pizza.owl tutorial into a structured, professional learning experience. It bridges the gap between semantic theory and real-world implementation, taking you step by step from your first class in Protégé to the architecture of executable knowledge systems.

What makes this book different:

  • Hands-on from the start: Build a working ontology while you learn — no prior experience required.
  • Theory and practice in sync: Every concept is paired with Protégé workflows, reasoning exercises, and verification steps.
  • Architectural depth: Learn not just how to model, but why modeling decisions matter for governance, reasoning, and enterprise-scale knowledge graphs.
  • The SKDL framework: Follow a seven-stage Semantic Knowledge Development Lifecycle that turns conceptual models into executable intelligence.
  • Living content: Get lifetime updates as the book and video series evolve — no DRM, no hidden fees.

Whether you are an enterprise architect, AI engineer, knowledge graph practitioner, or a curious learner, this book gives you a repeatable methodology for engineering machine-understandable meaning.

The journey begins with pizza. But the real subject is meaning.

Includes free access to the complete open-source GitHub repository: code snapshots, reference models, and a growing community of ontology engineers.

Get the Leanpub edition and support the creation of more open semantic engineering content.

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Author

About the Author

Xiaoqi Zhao

Xiaoqi Zhao (Yasen) is a Global Enterprise Architect with nearly 30 years of industry experience across automotive, finance, and consulting. Holding an MBA from Tsinghua University, he is the founder of the Executable Knowledge Architecture (EKA) framework, advocating for data-driven, "Diagramming as Code" methodologies.

A certified expert in TOGAF, ArchiMate, and CBA, Xiaoqi is a prominent technical educator and content creator. He specializes in intersecting enterprise architecture with semantic technologies, empowering the global community to build executable ontology models.

Contents

Table of Contents

  • Foreword: from Timothy W. Cook
  • Foreword: from Michael DeBellis
  • Preface: from the author
  • 0. EKA Formalized: The Executable Knowledge Architecture Definition
  • 1. Entering the World of Ontology Engineering with Protégé and Pizza.owl
  • 2. Building Your First Ontology in Protégé
  • 3. Installing Protégé and Understanding the Ontology Engineering Workspace
  • 4. Creating Classes and Building the Pizza Ontology Skeleton in Protégé
  • 5. Defining Named Classes in the Pizza Ontology
  • 6. Applying a Reasoner to the Pizza Ontology
  • 7. Ensuring Semantic Integrity with Disjoint Classes
  • 8. Understanding the RDF File Structure: Looking Beneath Protégé into the Language of Semantic Knowledge
  • 9. Building Semantic Foundations Through Class Hierarchy
  • 10. Connecting Concepts Through Object Properties
  • 11. Strengthening Semantic Intelligence Through Inverse Properties
  • 12. Governing Semantic Relationship Behavior Through Object Property Characteristics
  • 13. Governing Semantic Boundaries with Property Domain and Range
  • 14. Semantic Requirements -- From Existential Restrictions to Universal Rules
  • 15.Semantic Knowledge Development Lifecycle (SKDL)
  • 16. Conceptual Modeling: Stage 1 of the Semantic Knowledge Development Lifecycle
  • Appendix A. Chapter mapping with Exercises
  • Contributors
  • CHANGELOG
  • Error Hunting: Welcome your Contribution

Contributors

About the Contributors

Timothy W. Cook

Michael DeBellis

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