Tools for Reproducible Research
With Membership
Minimum paid price

Tools for Reproducible Research

About the Book

Reproducibility of results is vital to science. This book is a collection of tools and workflows that have been developed to reproduce analytic results, with a focus on analysis done in R programming and Python languages and aims to help researchers and research students to develop their own digital archives.

About the Author

Soroor Hediyeh-Zadeh
Soroor Hediyeh-Zadeh

Soroor Hediyeh-Zadeh is a Research Assitant at the Bioinformatics Division, Walter and Eliza Hall Institute.

She graduated from The University of Melbourne with a Bachelor's degree in Science, majoring in Mathematics and Statistics. She started her research career in breast cancer systems biology as an undergraduate research student with Melissa Davis in 2014, and has been working as a RA since then. She is the author of OPPAR Bioconductor package, and an organiser of R-Ladies Melbourne group. She is interested in computational biology, R statistical programming language and reproducible research.

Table of Contents

    • Preface
    • Reproducible Research with Docker
      • Minimal Docker tutorial
      • Writing Dockerfiles
      • Building Docker Images
      • Running Docker Images
      • Docker commands cheatsheet
  • Notes

The Leanpub 60 Day 100% Happiness Guarantee

Within 60 days of purchase you can get a 100% refund on any Leanpub purchase, in two clicks.

Now, this is technically risky for us, since you'll have the book or course files either way. But we're so confident in our products and services, and in our authors and readers, that we're happy to offer a full money back guarantee for everything we sell.

You can only find out how good something is by trying it, and because of our 100% money back guarantee there's literally no risk to do so!

So, there's no reason not to click the Add to Cart button, is there?

See full terms...

80% Royalties. Earn $16 on a $20 book.

We pay 80% royalties. That's not a typo: you earn $16 on a $20 sale. If we sell 5000 non-refunded copies of your book or course for $20, you'll earn $80,000.

(Yes, some authors have already earned much more than that on Leanpub.)

In fact, authors have earnedover $13 millionwriting, publishing and selling on Leanpub.

Learn more about writing on Leanpub

Free Updates. DRM Free.

If you buy a Leanpub book, you get free updates for as long as the author updates the book! Many authors use Leanpub to publish their books in-progress, while they are writing them. All readers get free updates, regardless of when they bought the book or how much they paid (including free).

Most Leanpub books are available in PDF (for computers) and EPUB (for phones, tablets and Kindle). The formats that a book includes are shown at the top right corner of this page.

Finally, Leanpub books don't have any DRM copy-protection nonsense, so you can easily read them on any supported device.

Learn more about Leanpub's ebook formats and where to read them

Write and Publish on Leanpub

You can use Leanpub to easily write, publish and sell in-progress and completed ebooks and online courses!

Leanpub is a powerful platform for serious authors, combining a simple, elegant writing and publishing workflow with a store focused on selling in-progress ebooks.

Leanpub is a magical typewriter for authors: just write in plain text, and to publish your ebook, just click a button. (Or, if you are producing your ebook your own way, you can even upload your own PDF and/or EPUB files and then publish with one click!) It really is that easy.

Learn more about writing on Leanpub